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Singularity Hints
Checkpoint Save Tips
1 of 3: If you reloaded the last checkpoint save after getting it, you can reloot the supply crate that's just beyond the Pearl's boarding ramp before going up it.
2 of 3: After you go up the ramp and get the next checkpoint save, reload it and go back down the ramp so you can raid the supply crate for a third time. (If you have the Scientist equipment upgrade, hold out for at least 400 units of E99 tech.)
3 of 3: After that, you might want to revisit the docks' augmentor before boarding the Pearl to see if there's any more upgrades you want to buy now.